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Last modified

2014-09-17

Download JR-Assembler

Download the latest version of JR-Assembler here.

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Third-party tools

To run the complete pipeline of JR-Assembler, download the following third-party tools.

(a) DustMasker

ftp://occams.dfci.harvard.edu/pub/bio/tgi/software/seqclean/mdust.tar.gz

(b) SOAPdenovo error correction (SOAPec)

http://soap.genomics.org.cn/soapdenovo.html

(c) FLASH

http://ccb.jhu.edu/software/FLASH/

(d) SSPACE

http://www.baseclear.com/

Genome assembly results

This table lists the genome assemblies by JR-Assembler and other current assemblers.

To download the assemblies, please right click and "save link as...".

Organism

Strain

NCBI SRA

Assembler

E. coli

MG1655

SRX016044

JR-Assembler Edena (m=53) Taipan (k=50)

ABySS (k=45) Velvet (k=45) SOAPdeNOVO (k=53)

S. roseosporus

NRRL 11379

SRX026747

JR-Assembler

ABySS (k=45) Velvet (k=49) SOAPdenovo (k=63)

N. crassa

305

SRX030834

JR-Assembler Edena (m=45)

Velvet (k=37) SOAPdenovo (k=47)

S. parasitica

CBS233.65

SRX022535

JR-Assembler Edena (m=59)

ABySS (k=49) Velvet (k=51) SOAPdenovo (k=63)

P. falciparum

3D7

SRX016057,58,59

JR-Assembler Edena (m=57)

ABySS (k=45) Velvet (k=57) SOAPdenovo (k=69)

M. zebra

　

SRP004788

JR-Assembler
SOAPdenovo

S. araneus

　

SRP005678

JR-Assembler

Questions: jr-assembler@iis.sinica.edu.tw